Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs1977055 chr6:166794401 T/C 0.00014 488 33.27 31.87 31.43 KM Plot
THCA rs1980811 chr10:90401324 G/A 2.7E-5 499 32.9 31.3 27.02 KM Plot
THCA rs1983775 chr10:81663575 G/A 2.7E-9 494 31.62 31.45 14.52 KM Plot
THCA rs1983776 chr10:81663695 C/T 2.7E-9 494 31.62 31.45 14.52 KM Plot
THCA rs199772267 chr1:152971103 GGGCAGCCATGCGCT/G 0.000141 501 31.53 32.37 37.7 KM Plot
THCA rs199825576 chr13:108908169 CTT/GTT 2.37E-6 496 31.43 32.47 24.63 KM Plot
THCA rs199858280 chr5:54885232 C/CTT 3.23E-7 486 20.23 30.8 32.18 KM Plot
THCA rs1998780 chr13:50128844 G/A 1.68E-5 501 34.52 29.37 31.8 KM Plot
THCA rs1998781 chr13:50129173 C/G 1.68E-5 501 34.52 29.37 31.8 KM Plot
THCA rs200192080 chr13:108883981 GC/G 8.45E-6 494 31.43 32.03 26.03 KM Plot
THCA rs2002111 chr13:108841956 G/A 4.02E-7 485 31.45 31.77 26.97 KM Plot
THCA rs200391652 chr7:44337723 A/AAAAAC 1.46E-5 499 31.87 30.3 18.43 KM Plot
THCA rs200421605 chr8:60168439 A/AT 5.33E-5 489 31.73 27.4 28.23 KM Plot
THCA rs200539248 chr10:29326825 ATTAT/A 2.75E-9 500 31.77 30.63 29.28 KM Plot
THCA rs200751232 chr5:178217270 GCT/G 4.65E-5 499 31.47 33.97 24.9 KM Plot